Joshua Udall: search on Z-Library

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1

Polyploidy and Crop Improvement

Udall, Joshua A., Wendel, Jonathan F.

Journal:

Year:

2006

Language:

english

File:

PDF, 611 KB

english, 2006

2

Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napusL.): 1. Identification of genomic regions from winter germplasm

Pablo A. Quijada, Joshua A. Udall, Bart Lambert, Thomas C. Osborn

Journal:

Theoretical and Applied Genetics

Year:

2006

Language:

english

File:

PDF, 714 KB

english, 2006

3

Genome redundancy and plasticity within ancient and recent Brassica crop species

LEWIS N. LUKENS, PABLO A. QUIJADA, JOSHUA UDALL, J. CHRIS PIRES, M. ERIC SCHRANZ, THOMAS C. OSBORN

Journal:

Biological Journal of the Linnean Society

Year:

2004

Language:

english

File:

PDF, 176 KB

english, 2004

4

Plant Polyploidy || Homoeologous nonreciprocal recombination in polyploid cotton

Armel Salmon, Lex Flagel, Bao Ying, Joshua A. Udall and Jonathan F. Wendel

Journal:

New Phytologist

Year:

2010

Language:

english

File:

PDF, 1.50 MB

english, 2010

5

Genome Mapping in Plant Comparative Genomics

Chaney, Lindsay, Sharp, Aaron R., Evans, Carrie R., Udall, Joshua A.

Journal:

Trends in Plant Science

Year:

2016

Language:

english

File:

PDF, 2.03 MB

english, 2016

6

Chromatographic fingerprinting of Lupinus luteus L. (Leguminosae) main secondary metabolites: a case of domestication affecting crop variability

Osorio, Claudia E., Amiard, Veronique S. E., Aravena-Calvo, Javiera, Udall, Joshua A., Doyle, Jeff J., Maureira-Butler, Iván J.

Journal:

Genetic Resources and Crop Evolution

Year:

2018

Language:

english

File:

PDF, 792 KB

english, 2018

7

DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton

Page, Justin T., Liechty, Zach S., Alexander, Rich H., Clemons, Kimberly, Hulse-Kemp, Amanda M., Ashrafi, Hamid, Van Deynze, Allen, Stelly, David M., Udall, Joshua A., Bomblies, Kirsten

Journal:

Year:

2016

Language:

english

File:

PDF, 2.64 MB

english, 2016

8

Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton

Page, Justin T., Liechty, Zach S., Alexander, Rich H., Clemons, Kimberly, Hulse-Kemp, Amanda M., Ashrafi, Hamid, Van Deynze, Allen, Stelly, David M., Udall, Joshua A.

Journal:

Year:

2016

Language:

english

File:

PDF, 92 KB

english, 2016

9

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata)

Prabin Bajgain, Bryce A Richardson, Jared C Price, Richard C Cronn, Joshua A Udall

Journal:

Year:

2011

Language:

english

File:

PDF, 1.66 MB

english, 2011

10

Duplicate gene expression in allopolyploidGossypiumreveals two temporally distinct phases of expression evolution

Lex Flagel, Joshua Udall, Dan Nettleton, Jonathan Wendel

Journal:

Year:

2008

Language:

english

File:

PDF, 527 KB

english, 2008

11

Genomic expression dominance in allopolyploids

Ryan A Rapp, Joshua A Udall, Jonathan F Wendel

Journal:

Year:

2009

Language:

english

File:

PDF, 1.42 MB

english, 2009

12

Gene expression in developing fibres of Upland cotton (Gossypium hirsutumL.) was massively altered by domestication

Ryan A Rapp, Candace H Haigler, Lex Flagel, Ran H Hovav, Joshua A Udall, Jonathan F Wendel

Journal:

Year:

2010

Language:

english

File:

PDF, 1.15 MB

english, 2010

13

Quantitative trait loci for resistance toSclerotinia sclerotiorumand its association with a homeologous non-reciprocal transposition inBrassica napusL.

Jianwei Zhao, Joshua A. Udall, Pablo A. Quijada, Craig R. Grau, Jinling Meng, Thomas C. Osborn

Journal:

Theoretical and Applied Genetics

Year:

2006

Language:

english

File:

PDF, 327 KB

english, 2006

14

Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napusL.): 2. Identification of alleles from unadapted germplasm

Joshua A. Udall, Pablo A. Quijada, Bart Lambert, Thomas C. Osborn

Journal:

Theoretical and Applied Genetics

Year:

2006

Language:

english

File:

PDF, 459 KB

english, 2006

15

A majority of cotton genes are expressed in single-celled fiber

Ran Hovav, Joshua A. Udall, Einat Hovav, Ryan Rapp, Lex Flagel, Jonathan F. Wendel

Journal:

Year:

2008

Language:

english

File:

PDF, 411 KB

english, 2008

16

Cycloheximide treatment of cotton ovules alters the abundance of specific classes of mRNAs and generates novel ESTs for microarray expression profiling

Yingru Wu, Sophie Rozenfeld, Aurelie Defferrard, Katya Ruggiero, Joshua A. Udall, HyeRan Kim, Danny J. Llewellyn, Elizabeth S. Dennis

Journal:

Molecular Genetics and Genomics

Year:

2005

Language:

english

File:

PDF, 433 KB

english, 2005

17

Homoeologous nonreciprocal recombination in polyploid cotton

Armel Salmon, Lex Flagel, Bao Ying, Joshua A. Udall, Jonathan F. Wendel

Journal:

New Phytologist

Year:

2010

Language:

english

File:

PDF, 384 KB

english, 2010

18

Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense

Bhupendra Chaudhary, Ran Hovav, Ryan Rapp, Neetu Verma, Joshua A. Udall, Jonathan F. Wendel

Journal:

Evolution & Development

Year:

2008

Language:

english

File:

PDF, 687 KB

english, 2008

19

Development and mapping of SNP assays in allotetraploid cotton

Robert L. Byers, David B. Harker, Scott M. Yourstone, Peter J. Maughan, Joshua A. Udall

Journal:

Theoretical and Applied Genetics

Year:

2012

Language:

english

File:

PDF, 950 KB

english, 2012

20

Spotted cotton oligonucleotide microarrays for gene expression analysis

Joshua A Udall, Lex E Flagel, Foo Cheung, Andrew W Woodward, Ran Hovav, Ryan A Rapp, Jordan M Swanson, Jinsuk J Lee, Alan R Gingle, Dan Nettleton, Christopher D Town, Z Jeffrey Chen, Jonathan F Wendel

Journal:

Year:

2007

Language:

english

File:

PDF, 359 KB

english, 2007

21

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

Flagel, Lex E, Wendel, Jonathan F, Udall, Joshua A

Journal:

Year:

2012

Language:

english

File:

PDF, 674 KB

english, 2012

22

Yellow lupin (Lupinus luteusL.) transcriptome sequencing: molecular marker development and comparative studies

Parra-González, Lorena B, Aravena-Abarzúa, Gabriela A, Navarro-Navarro, Cristell S, Udall, Joshua, Maughan, Jeff, Peterson, Louis M, Salvo-Garrido, Haroldo E, Maureira-Butler, Iván J

Journal:

Year:

2012

Language:

english

File:

PDF, 1.49 MB

english, 2012

23

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

Paterson, Andrew H., Wendel, Jonathan F., Gundlach, Heidrun, Guo, Hui, Jenkins, Jerry, Jin, Dianchuan, Llewellyn, Danny, Showmaker, Kurtis C., Shu, Shengqiang, Udall, Joshua, Yoo, Mi-jeong, Byers, Rob

Journal:

Year:

2012

Language:

english

File:

PDF, 581 KB

english, 2012

24

Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutumL.)

Tyagi, Priyanka, Gore, Michael A., Bowman, Daryl T., Campbell, B. Todd, Udall, Joshua A., Kuraparthy, Vasu

Journal:

Theoretical and Applied Genetics

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

25

Polyploidy and the petal transcriptome ofGossypium

Rambani, Aditi, Page, Justin T, Udall, Joshua A

Journal:

BMC Plant Biology

Year:

2014

Language:

english

File:

PDF, 697 KB

english, 2014

26

Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and allotetraploid cotton

Xueying Guan,Gyoungju Nah,Qingxin Song,Joshua A Udall…

Journal:

BMC Research Notes

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

27

[IEEE 2013 IEEE 13th International Conference on Bioinformatics and Bioengineering (BIBE) - Chania, Greece (2013.11.10-2013.11.13)] 13th IEEE International Conference on BioInformatics and BioEngineering - Identification and correction of substitution errors in Moleculo long reads

Price, Jared, Ward, Judson, Udall, Joshua, Snell, Quinn, Clement, Mark

Year:

2013

Language:

english

File:

PDF, 212 KB

english, 2013

28

Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts

Hulse-Kemp, Amanda M, Ashrafi, Hamid, Zheng, Xiuting, Wang, Fei, Hoegenauer, Kevin A, Maeda, Andrea BV, Yang, S Samuel, Stoffel, Kevin, Matvienko, Marta, Clemons, Kimberly, Udall, Joshua A, Van Deynze

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

29

BamBam: genome sequence analysis tools for biologists

Page, Justin T, Liechty, Zachary S, Huynh, Mark D, Udall, Joshua A

Journal:

BMC Research Notes

Year:

2014

Language:

english

File:

PDF, 671 KB

english, 2014

30

Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium

Yurchenko, Olga P, Park, Sunjung, Ilut, Daniel C, Inmon, Jay J, Millhollon, Jon C, Liechty, Zach, Page, Justin T, Jenks, Matthew A, Chapman, Kent D, Udall, Joshua A, Gore, Michael A, Dyer, John M

Journal:

BMC Plant Biology

Year:

2014

Language:

english

File:

PDF, 2.40 MB

english, 2014

31

The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism

Hovav, Ran, Udall, Joshua A., Chaudhary, Bhupendra, Hovav, Einat, Flagel, Lex, Hu, Guanjing, Wendel, Jonathan F.

Journal:

Year:

2008

Language:

english

File:

PDF, 435 KB

english, 2008

32

Re-evaluating the phylogeny of allopolyploid Gossypium L.

Grover, Corrinne E., Gallagher, Joseph P., Jareczek, Josef J., Page, Justin T., Udall, Joshua A., Gore, Michael A., Wendel, Jonathan F.

Journal:

Molecular Phylogenetics and Evolution

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

33

Methods for mapping and categorization of DNA sequence reads from allopolyploid organisms

Page, Justin T, Udall, Joshua A

Journal:

Year:

2015

Language:

english

File:

PDF, 634 KB

english, 2015

34

A majority of cotton genes are expressed in single-celled fiber

Ran Hovav, Joshua A. Udall, Einat Hovav, Ryan Rapp, Lex Flagel and Jonathan F. Wendel

Journal:

Year:

2008

Language:

english

File:

PDF, 2.15 MB

english, 2008

35

OMWare: a tool for efficient assembly of genome-wide physical maps

Sharp, Aaron R., Udall, Joshua A.

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1007 KB

english, 2016

36

Widespread natural variation of DNA methylation within angiosperms

Niederhuth, Chad E., Bewick, Adam J., Ji, Lexiang, Alabady, Magdy S., Kim, Kyung Do, Li, Qing, Rohr, Nicholas A., Rambani, Aditi, Burke, John M., Udall, Joshua A., Egesi, Chiedozie, Schmutz, Jeremy, G

Journal:

Year:

2016

Language:

english

File:

PDF, 1.85 MB

english, 2016

37

Independent Domestication of Two Old World Cotton Species

Renny-Byfield, Simon, Page, Justin T., Udall, Joshua A., Sanders, William S., Peterson, Daniel G., Arick, Mark A., Grover, Corrinne E., Wendel, Jonathan F.

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 2.77 MB

english, 2016

38

Evolutionary Conservation and Divergence of Gene Coexpression Networks in Gossypium (Cotton) Seeds

Hu, Guanjing, Hovav, Ran, Grover, Corrinne E., Faigenboim-Doron, Adi, Kadmon, Noa, Page, Justin T., Udall, Joshua A., Wendel, Jonathan F.

Journal:

Genome Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 3.01 MB

english, 2017

39

Genome-wide divergence, haplotype distribution and population demographic histories for Gossypium hirsutum and Gossypium barbadense as revealed by genome-anchored SNPs

Reddy, Umesh K., Nimmakayala, Padma, Abburi, Venkata Lakshmi, Reddy, C. V. C. M., Saminathan, Thangasamy, Percy, Richard G., Yu, John Z., Frelichowski, James, Udall, Joshua A., Page, Justin T., Zhang,

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.39 MB

english, 2017

40

Nucleotide diversity in the two co-resident genomes of allopolyploid cotton

Grover, Corrinne E., Gallagher, Joseph P., Szadkowski, Emmanuel P., Page, Justin T., Gore, Michael A., Udall, Joshua A., Wendel, Jonathan F.

Journal:

Plant Systematics and Evolution

Year:

2017

Language:

english

File:

PDF, 1.96 MB

english, 2017

41

Is it ordered correctly? Validating genome assemblies by optical mapping

Udall, Joshua, Dawe, R. Kelly

Journal:

Year:

2017

Language:

english

File:

PDF, 1.99 MB

english, 2017

42

Development and characterization of InDel markers for Lupinus luteus L. (Fabaceae) and cross-species amplification in other Lupin species

Osorio, Claudia E., Udall, Joshua A., Salvo-Garrido, Haroldo, Maureira-Butler, Iván J.

Journal:

Electronic Journal of Biotechnology

Year:

2018

Language:

english

File:

PDF, 245 KB

english, 2018

43

De novo Genome Assembly of the Fungal Plant Pathogen Pyrenophora semeniperda

Soliai, Marcus M., Meyer, Susan E., Udall, Joshua A., Elzinga, David E., Hermansen, Russell A., Bodily, Paul M., Hart, Aaron A., Coleman, Craig E., Fisher, Matthew (Mat) Charles

Journal:

Year:

2014

Language:

english

File:

PDF, 5.20 MB

english, 2014

44

Insights into Transcriptomes of Big and Low Sagebrush

Huynh, Mark D., Page, Justin T., Richardson, Bryce A., Udall, Joshua A., Gibas, Cynthia

Journal:

Year:

2015

Language:

english

File:

PDF, 764 KB

english, 2015

45

SNP Discovery via Genomic Reduction, Barcoding, and 454-Pyrosequencing in Amaranth

Maughan, Peter J., Yourstone, Scott M., Jellen, Eric N., Udall, Joshua A.

Journal:

The Plant Genome

Year:

2009

Language:

english

File:

PDF, 1.14 MB

english, 2009

46

The first genetic map for yellow lupin enables genetic dissection of adaptation traits in an orphan grain legume crop

Iqbal, Muhammad Munir, Huynh, Mark, Udall, Joshua A., Kilian, Andrzej, Adhikari, Kedar N., Berger, Jens D., Erskine, William, Nelson, Matthew N.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.35 MB

english, 2019

47

Breeding for Quantitative Traits in Plants.

Udall, Joshua A.

Journal:

Year:

2003

File:

PDF, 71 KB

2003

48

Phenotypic Effects of Introgressing Chinese Winter and Resynthesized Brassica napus L. Germplasm into Hybrid Spring Canola

Udall, Joshua A., Quijada, Pablo A., Polewicz, Hieronim, Vogelzang, Robert, Osborn, Thomas C.

Journal:

Year:

2004

File:

PDF, 111 KB

2004

49

De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri

Udall, Joshua A., Long, Evan, Hanson, Chris, Yuan, Daojun, Ramaraj, Thiruvarangan, Conover, Justin L., Gong, Lei, Arick, Mark A., Grover, Corrinne E., Peterson, Daniel G., Wendel, Jonathan F.

Journal:

G3 Genes|Genome|Genetics

Year:

2019

File:

PDF, 1.10 MB

2019

50

GENOMICS AND PLANT BREEDING

Thro, Ann Marie, Parrott, Wayne, Udall, Joshua A., Beavis, William D.

Journal:

Year:

2004

File:

PDF, 431 KB

2004